AMY52030.1 protein (Rhodococcus fascians D188)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

AMY52030.1

Hypothetical protein. (273 aa)

Predicted Functional Partners:

hemC

0.978

AMY55523.1

0.971

nasF

0.971

cysG

0.954

hemE

0.941

todS

0.928

AMY56146.1

0.919

AMY53765.1

0.874

narK

0.779

hemB

0.736

Your Current Organism:

Rhodococcus fascians D188

NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMY52030.1	AMY53765.1	A3L23_00673	A3L23_02428	Hypothetical protein.	Hypothetical protein.	0.874
AMY52030.1	AMY55523.1	A3L23_00673	A3L23_04215	Hypothetical protein.	Hypothetical protein.	0.971
AMY52030.1	AMY56146.1	A3L23_00673	A3L23_04848	Hypothetical protein.	Hypothetical protein.	0.919
AMY52030.1	cysG	A3L23_00673	A3L23_02813	Hypothetical protein.	Siroheme synthase.	0.954
AMY52030.1	hemB	A3L23_00673	A3L23_02814	Hypothetical protein.	Delta-aminolevulinic acid dehydratase; Belongs to the ALAD family.	0.736
AMY52030.1	hemC	A3L23_00673	A3L23_02811	Hypothetical protein.	Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.	0.978
AMY52030.1	hemE	A3L23_00673	A3L23_04446	Hypothetical protein.	Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.	0.941
AMY52030.1	narK	A3L23_00673	A3L23_04851	Hypothetical protein.	Nitrate/nitrite transporter NarK.	0.779
AMY52030.1	nasF	A3L23_00673	A3L23_04629	Hypothetical protein.	Uroporphyrinogen-III C-methyltransferase.	0.971
AMY52030.1	todS	A3L23_00673	A3L23_02212	Hypothetical protein.	Sensor histidine kinase TodS.	0.928
AMY53765.1	AMY52030.1	A3L23_02428	A3L23_00673	Hypothetical protein.	Hypothetical protein.	0.874
AMY53765.1	AMY55523.1	A3L23_02428	A3L23_04215	Hypothetical protein.	Hypothetical protein.	0.996
AMY53765.1	hemE	A3L23_02428	A3L23_04446	Hypothetical protein.	Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.	0.400
AMY53765.1	todS	A3L23_02428	A3L23_02212	Hypothetical protein.	Sensor histidine kinase TodS.	0.996
AMY55523.1	AMY52030.1	A3L23_04215	A3L23_00673	Hypothetical protein.	Hypothetical protein.	0.971
AMY55523.1	AMY53765.1	A3L23_04215	A3L23_02428	Hypothetical protein.	Hypothetical protein.	0.996
AMY55523.1	cysG	A3L23_04215	A3L23_02813	Hypothetical protein.	Siroheme synthase.	0.501
AMY55523.1	hemC	A3L23_04215	A3L23_02811	Hypothetical protein.	Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.	0.460
AMY55523.1	hemE	A3L23_04215	A3L23_04446	Hypothetical protein.	Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.	0.721
AMY55523.1	nasF	A3L23_04215	A3L23_04629	Hypothetical protein.	Uroporphyrinogen-III C-methyltransferase.	0.563