Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpfAResuscitation-promoting factor RpfA. (203 aa)    
Predicted Functional Partners:
AMY53177.1
Hypothetical protein.
   
    0.591
AMY53302.1
Putative HTH-type transcriptional regulator.
  
     0.561
lytC_1
N-acetylmuramoyl-L-alanine amidase LytC.
 
  
 0.491
ripA_2
Peptidoglycan endopeptidase RipA.
 
 
 0.444
AMY55846.1
Hypothetical protein.
  
   
 0.442
AMY52329.1
NAD(P)H dehydrogenase (quinone).
   
  
 0.428
fldA
Flavodoxin.
   
  
 0.428
AMY53883.1
Trehalase.
   
  
 0.413
crp
cAMP receptor protein.
  
   
 0.411
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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