Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ohrBOrganic hydroperoxide resistance protein OhrB. (141 aa)    
Predicted Functional Partners:
ohrR_1
Organic hydroperoxide resistance transcriptional regulator.
  
 0.959
yfmJ_1
Putative NADP-dependent oxidoreductase YfmJ.
  
    0.845
ohrR_2
Organic hydroperoxide resistance transcriptional regulator.
  
 0.630
yfiY_1
Putative siderophore-binding lipoprotein YfiY.
       0.537
rluA_1
Ribosomal large subunit pseudouridine synthase A.
       0.521
dps
DNA protection during starvation protein; Belongs to the Dps family.
  
  
 0.479
ftpA
Fine tangled pili major subunit; Belongs to the Dps family.
  
  
 0.479
metE
5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.
     
 0.444
todS
Sensor histidine kinase TodS.
  
  
 0.440
AMY55523.1
Hypothetical protein.
  
  
 0.417
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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