Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY52121.1Hypothetical protein. (259 aa)    
Predicted Functional Partners:
trxA_1
Thioredoxin.
 
     0.895
AMY53900.1
Hypothetical protein.
  
     0.755
AMY51370.1
Hypothetical protein.
  
     0.738
AMY54893.1
Hypothetical protein.
  
     0.734
AMY55779.1
Hypothetical protein.
  
     0.728
AMY55620.1
Hypothetical protein.
  
     0.725
AMY54405.1
Hypothetical protein.
  
     0.715
AMY54401.1
Putative monoacyl phosphatidylinositol tetramannoside-binding protein LpqW.
  
     0.713
AMY53346.1
Putative membrane protein.
  
    0.712
AMY56159.1
Hypothetical protein.
  
     0.711
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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