Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AMY52127.1Hypothetical protein; May play a role in the intracellular transport of hydrophobic ligands. (232 aa)    
Predicted Functional Partners:
AMY52126.1
Hypothetical protein.
       0.773
ksgA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.758
AMY51974.1
Intracellular chorismate mutase.
  
     0.709
bmrU
Putative lipid kinase BmrU.
 
   
 0.687
AMY51481.1
Hypothetical protein.
  
     0.667
AMY55842.1
35 kDa protein.
  
     0.639
AMY51403.1
Hypothetical protein.
  
     0.618
pmt
Putative dolichyl-phosphate-mannose--protein mannosyltransferase.
 
     0.614
AMY55239.1
3'-5' exoribonuclease; Exonuclease that cleaves single-stranded 3' overhangs of double-stranded RNA.
  
     0.614
AMY55788.1
Hypothetical protein.
  
     0.609
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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