Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
gcvT_1Aminomethyltransferase; Belongs to the GcvT family. (382 aa)    
Predicted Functional Partners:
AMY52134.1
Hypothetical protein.
       0.879
erpA
Iron-sulfur cluster insertion protein ErpA; Belongs to the HesB/IscA family.
 
 
 0.874
pabC
Aminodeoxychorismate lyase.
       0.770
AMY52135.1
Hypothetical protein.
 
     0.761
nasF
Uroporphyrinogen-III C-methyltransferase.
  
  
 0.617
AMY53719.1
Putative metallophosphoesterase.
 
     0.572
cld
Chlorite dismutase.
  
     0.535
dnaX_2
DNA polymerase III subunit gamma/tau.
  
     0.524
cydA
Cytochrome bd ubiquinol oxidase subunit 1.
       0.507
cydB
Cytochrome bd-I ubiquinol oxidase subunit 2.
       0.495
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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