Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
fbpA_1Fe(3+)-binding periplasmic protein. (346 aa)    
Predicted Functional Partners:
cysW_1
Sulfate transport system permease protein CysW.
 
 
 0.998
fbpC_1
Fe(3+) ions import ATP-binding protein FbpC.
 
 
 0.984
efeO
Iron uptake system component EfeO.
   
    0.599
nicC
6-hydroxynicotinate 3-monooxygenase.
       0.547
ttuB
Putative tartrate transporter.
  
  
 0.457
glpT
Glycerol-3-phosphate transporter.
  
  
 0.457
yhjX_1
Putative MFS-type transporter YhjX.
  
  
 0.442
yhjE_1
Inner membrane metabolite transport protein YhjE.
  
  
 0.442
AMY53524.1
Hypothetical protein.
  
  
 0.442
proP_4
Proline/betaine transporter.
  
  
 0.442
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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