Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY52183.1Putative HIT-like protein. (164 aa)    
Predicted Functional Partners:
nagD_1
Ribonucleotide monophosphatase NagD.
       0.587
purB
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 
 0.571
AMY55725.1
Hypothetical protein.
   
 0.566
lysX
Lysylphosphatidylglycerol biosynthesis bifunctional protein LysX; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
 0.458
acuC
Acetoin utilization protein AcuC.
   
  0.456
lysS1
Lysine--tRNA ligase 1; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
 0.452
cobB_1
NAD-dependent protein deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
  
 
  0.412
cobB_2
NAD-dependent protein deacylase; Belongs to the sirtuin family. Class III subfamily.
  
 
  0.412
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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