Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rcdA_1HTH-type transcriptional regulator RcdA. (215 aa)    
Predicted Functional Partners:
AMY55116.1
Hypothetical protein.
  
     0.699
AMY55828.1
Hypothetical protein.
  
     0.688
AMY55365.1
Hypothetical protein.
  
     0.681
AMY54220.1
Hypothetical protein.
  
     0.629
cfp6
Low molecular weight protein antigen 6.
  
     0.618
AMY54405.1
Hypothetical protein.
  
     0.615
AMY55796.1
Hypothetical protein.
  
     0.610
AMY55620.1
Hypothetical protein.
  
     0.605
AMY54354.1
Hypothetical protein.
  
     0.603
AMY54893.1
Hypothetical protein.
  
     0.600
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.