Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
aspC_1Aspartate aminotransferase. (382 aa)    
Predicted Functional Partners:
AMY51578.1
Thermophilic serine proteinase; Belongs to the peptidase S8 family.
      
 0.526
AMY52191.1
Hypothetical protein.
       0.489
ansA
L-asparaginase.
     
 0.483
gltB_1
Glutamate synthase [NADPH] large chain.
  
  
 0.480
gltB_2
Glutamate synthase [NADPH] large chain.
  
  
 0.480
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
   
   0.479
nudC_2
NADH pyrophosphatase; Belongs to the Nudix hydrolase family.
 
    0.422
gadA
Glutamate decarboxylase alpha; Belongs to the group II decarboxylase family.
  
  
 0.418
cysG
Siroheme synthase.
  
  
 0.404
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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