Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY52195.1HIT-like protein. (141 aa)    
Predicted Functional Partners:
AMY55392.1
Hypothetical protein; Belongs to the UPF0434 family.
  
    0.779
AMY52193.1
Hypothetical protein.
       0.762
AMY52194.1
Undecaprenyl-phosphate mannosyltransferase.
  
    0.758
purD
Phosphoribosylamine--glycine ligase; Belongs to the GARS family.
   
   0.726
AMY55725.1
Hypothetical protein.
   
 0.566
lysX
Lysylphosphatidylglycerol biosynthesis bifunctional protein LysX; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
 0.458
acuC
Acetoin utilization protein AcuC.
   
  0.456
lysS1
Lysine--tRNA ligase 1; Belongs to the class-II aminoacyl-tRNA synthetase family.
   
 0.452
pat
Putative phenylalanine aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
   
 
 0.444
ftsH_2
ATP-dependent zinc metalloprotease FtsH; Belongs to the AAA ATPase family.
  
  
 0.414
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
Server load: low (10%) [HD]