Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dcuS_2Sensor histidine kinase DcuS. (548 aa)    
Predicted Functional Partners:
citT
Transcriptional regulatory protein CitT.
 
 
 0.980
dcuR
Transcriptional regulatory protein DcuR.
 
 
 0.910
citN_1
Citrate transporter.
 
   
 0.740
AMY52202.1
Hypothetical protein.
 
     0.526
todS
Sensor histidine kinase TodS.
  
  
 0.520
AMY52201.1
Universal stress protein.
       0.445
AMY52231.1
Hypothetical protein.
 
    0.425
AMY52659.1
Hypothetical protein.
 
    0.408
dctA_2
Aerobic C4-dicarboxylate transport protein; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
 
  
 0.405
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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