Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY52201.1Universal stress protein. (136 aa)    
Predicted Functional Partners:
AMY52202.1
Hypothetical protein.
       0.773
citN_1
Citrate transporter.
       0.660
ywqF
UDP-glucose 6-dehydrogenase YwqF.
      
 0.618
rmlB
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
      
 0.618
AMY52232.1
Hypothetical protein.
 
     0.478
AMY53936.1
Hypothetical protein.
  
     0.462
dcuS_2
Sensor histidine kinase DcuS.
       0.445
citT
Transcriptional regulatory protein CitT.
       0.434
yceI_2
Protein YceI; Belongs to the UPF0312 family.
  
     0.400
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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