Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rbsR_1Ribose operon repressor. (341 aa)    
Predicted Functional Partners:
gltB_1
Glutamate synthase [NADPH] large chain.
    
 
 0.736
gltB_2
Glutamate synthase [NADPH] large chain.
    
 
 0.736
xylG
Xylose import ATP-binding protein XylG.
  
  
 0.641
chvE
Multiple sugar-binding periplasmic receptor ChvE.
     
 0.577
xylH
Xylose transport system permease protein XylH; Belongs to the binding-protein-dependent transport system permease family.
       0.565
ptsH
Phosphocarrier protein HPr.
   
 
 0.471
fruA
PTS system fructose-specific EIIABC component.
     
 0.466
xylB_2
Xylulose kinase; Belongs to the FGGY kinase family.
 
 
 
 0.438
rbsA_5
Ribose import ATP-binding protein RbsA; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.410
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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