Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rdpA(R)-phenoxypropionate/alpha-ketoglutarate- dioxygenase. (250 aa)    
Predicted Functional Partners:
AMY52250.1
Hypothetical protein.
 
    0.897
aroB_1
3-dehydroquinate synthase.
 
     0.839
AMY52249.1
Putative O-methyltransferase.
 
    0.839
ddl_1
D-alanine--D-alanine ligase.
 
     0.837
AMY52247.1
Phosphorylated carbohydrates phosphatase.
     
 0.642
AMY52253.1
Hypothetical protein.
       0.613
lgrD_3
Linear gramicidin synthase subunit D.
 
  
 0.567
tycC_1
Tyrocidine synthase 3.
 
  
 0.523
dhbF_1
Dimodular nonribosomal peptide synthase.
 
  
 0.518
lgrD_4
Linear gramicidin synthase subunit D.
 
  
 0.514
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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