Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY52253.1Hypothetical protein. (241 aa)    
Predicted Functional Partners:
car
Carboxylic acid reductase.
  
     0.717
AMY54390.1
Hypothetical protein.
  
     0.705
cdoA
Cysteine dioxygenase.
  
     0.644
AMY52250.1
Hypothetical protein.
       0.618
AMY52249.1
Putative O-methyltransferase.
       0.613
ddl_1
D-alanine--D-alanine ligase.
       0.613
rdpA
(R)-phenoxypropionate/alpha-ketoglutarate- dioxygenase.
       0.613
AMY53115.1
Hypothetical protein.
 
     0.607
aroB_1
3-dehydroquinate synthase.
       0.596
papA2
Trehalose-2-sulfate acyltransferase papA2.
  
     0.524
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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