Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
abfBExtracellular exo-alpha-L-arabinofuranosidase. (432 aa)    
Predicted Functional Partners:
AMY52436.1
Hypothetical protein.
 
   
 0.722
AMY54978.1
Hypothetical protein.
 
   
 0.663
AMY52382.1
Hypothetical protein.
  
     0.652
betI_2
HTH-type transcriptional regulator BetI.
  
     0.627
AMY52257.1
Hypothetical protein.
       0.608
vgb_2
Virginiamycin B lyase.
  
   
 0.608
AMY52360.1
Hypothetical protein.
  
     0.546
AMY54976.1
Hypothetical protein.
 
   
 0.516
AMY52256.1
Hypothetical protein.
       0.513
AMY51720.1
Hypothetical protein.
  
     0.512
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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