Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
AMY52265.1Hypothetical protein. (135 aa)    
Predicted Functional Partners:
sigI
Putative ECF RNA polymerase sigma factor SigI; Belongs to the sigma-70 factor family.
 
  
 0.953
AMY56121.1
Hypothetical protein; Belongs to the sigma-70 factor family.
 
  
 0.725
AMY56120.1
Hypothetical protein.
  
     0.578
fbpC_2
Diacylglycerol acyltransferase/mycolyltransferase Ag85C.
       0.547
fba_1
Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.
       0.545
AMY51863.1
Hypothetical protein.
 
     0.489
rbsR_2
Ribose operon repressor.
       0.472
AMY52262.1
Hypothetical protein.
       0.470
AMY54484.1
Hypothetical protein.
 
    0.423
coaA_1
Pantothenate kinase.
       0.411
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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