Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rbsR_2Ribose operon repressor. (336 aa)    
Predicted Functional Partners:
rbsC_2
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.768
rbsA_2
Ribose import ATP-binding protein RbsA.
 
  
 0.750
gltB_1
Glutamate synthase [NADPH] large chain.
    
 
 0.736
gltB_2
Glutamate synthase [NADPH] large chain.
    
 
 0.736
fba_1
Fructose-bisphosphate aldolase; Catalyzes the aldol condensation of dihydroxyacetone phosphate (DHAP or glycerone-phosphate) with glyceraldehyde 3-phosphate (G3P) to form fructose 1,6-bisphosphate (FBP) in gluconeogenesis and the reverse reaction in glycolysis; Belongs to the class II fructose-bisphosphate aldolase family.
   
 
 0.724
rbsB_1
D-ribose-binding periplasmic protein.
 
  
 0.700
yihV
Sulfofructose kinase.
  
  
 0.697
coaA_1
Pantothenate kinase.
       0.668
malL
Oligo-1,6-glucosidase.
  
  
 0.659
araA_1
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
     
 0.641
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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