Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
puo_1Putrescine oxidase. (453 aa)    
Predicted Functional Partners:
ald_1
3-succinoylsemialdehyde-pyridine dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.911
ramA_2
(R)-stereoselective amidase.
    
 0.905
bauA
Beta-alanine--pyruvate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.905
acuC
Acetoin utilization protein AcuC.
   
 0.763
aguA
Putative agmatine deiminase; Belongs to the agmatine deiminase family.
 
   
 0.665
puuP_2
Putrescine importer PuuP.
 
 
 
 0.561
AMY52961.1
Hypothetical protein.
    
 0.549
rapA_1
RNA polymerase-associated protein RapA.
    
 0.549
rapA_2
RNA polymerase-associated protein RapA.
    
 0.549
rapA_3
RNA polymerase-associated protein RapA.
    
 0.549
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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