Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
aguAPutative agmatine deiminase; Belongs to the agmatine deiminase family. (346 aa)    
Predicted Functional Partners:
ramA_2
(R)-stereoselective amidase.
 
 0.942
AMY54556.1
N-carbamoyl-D-amino acid hydrolase.
  
 0.892
puo_1
Putrescine oxidase.
 
   
 0.665
ureA
Urease subunit alpha; Belongs to the urease beta subunit family.
       0.528
gatA_2
Glutamyl-tRNA(Gln) amidotransferase subunit A.
 
  
 0.515
ramA_1
(R)-stereoselective amidase.
 
  
 0.488
AMY52894.1
N-carbamoyl-D-amino acid hydrolase.
  
 0.445
ramA_3
(R)-stereoselective amidase.
  
 0.436
nadC
Nicotinate-nucleotide pyrophosphorylase; Belongs to the NadC/ModD family.
   
    0.404
gbh
Guanidinobutyrase; Belongs to the arginase family.
     
 0.400
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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