Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY52289.1Long-chain-fatty-acid--CoA ligase FadD13. (507 aa)    
Predicted Functional Partners:
mas
Mycocerosic acid synthase.
 
 0.919
ppsA
Phthiocerol synthesis polyketide synthase type I PpsA.
 
 0.872
AMY52291.1
Hypothetical protein.
 
   
 0.745
AMY52292.1
Putative short-chain type dehydrogenase/reductase.
  
 
 0.716
lgrD_1
Linear gramicidin synthase subunit D; Belongs to the ATP-dependent AMP-binding enzyme family.
  
0.708
AMY52290.1
Putative enoyl-CoA hydratase 1.
     
 0.695
lgrD_3
Linear gramicidin synthase subunit D.
  
 0.587
acdA_7
Acyl-CoA dehydrogenase.
  
 
 0.542
AMY52722.1
Acyl-CoA dehydrogenase, short-chain specific.
  
 
 0.541
aidB_2
Putative acyl-CoA dehydrogenase AidB.
  
 
 0.541
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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