Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
kipR_1HTH-type transcriptional regulator KipR. (259 aa)    
Predicted Functional Partners:
kipA_1
KipI antagonist.
  
  
 0.813
tsaM1_1
Toluene-4-sulfonate monooxygenase system iron-sulfur subunit TsaM1.
 
   
 0.704
AMY52301.1
Hypothetical protein.
       0.649
pobB_1
Phenoxybenzoate dioxygenase subunit beta.
     
 0.618
selO
Hypothetical protein; Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation). Belongs to the SELO family.
       0.485
kipI
Kinase A inhibitor.
  
    0.430
kipA_2
KipI antagonist.
  
    0.419
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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