Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMY52338.1Hypothetical protein. (328 aa)    
Predicted Functional Partners:
AMY52337.1
Hypothetical protein.
       0.778
AMY52339.1
Hypothetical protein.
       0.671
ubiG_1
Ubiquinone biosynthesis O-methyltransferase.
 
  
 0.658
ectB
Diaminobutyrate--2-oxoglutarate transaminase.
  
  
 0.573
garL
5-keto-4-deoxy-D-glucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
     0.529
gltB_1
Glutamate synthase [NADPH] large chain.
      
 0.492
gltB_2
Glutamate synthase [NADPH] large chain.
      
 0.492
ectC
L-ectoine synthase; Catalyzes the circularization of gamma-N-acetyl-alpha,gamma- diaminobutyric acid (ADABA) to ectoine (1,4,5,6-tetrahydro-2-methyl-4- pyrimidine carboxylic acid), which is an excellent osmoprotectant.
     
 0.483
guaA_1
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.475
lly
4-hydroxyphenylpyruvate dioxygenase.
  
  
 0.418
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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