Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
caiD_2Carnitinyl-CoA dehydratase. (265 aa)    
Predicted Functional Partners:
bbsG_2
(R)-benzylsuccinyl-CoA dehydrogenase.
 
 0.908
acdA_4
Acyl-CoA dehydrogenase.
 
 0.898
fadK
Short-chain-fatty-acid--CoA ligase.
 
   0.831
fabF_2
3-oxoacyl-[acyl-carrier-protein] synthase 2.
  
 0.827
acdA_1
Acyl-CoA dehydrogenase.
  
 0.809
acdA_2
Acyl-CoA dehydrogenase.
  
 0.809
paaG_2
1,2-epoxyphenylacetyl-CoA isomerase.
 
   
 0.778
AMY55523.1
Hypothetical protein.
  
 0.759
AMY52745.1
Hypothetical protein.
   
 0.719
AMY52364.1
Hypothetical protein; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.710
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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