Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
acdA_4Acyl-CoA dehydrogenase. (350 aa)    
Predicted Functional Partners:
bbsG_2
(R)-benzylsuccinyl-CoA dehydrogenase.
     0.993
acdA_5
Acyl-CoA dehydrogenase.
 
     0.975
acdA_7
Acyl-CoA dehydrogenase.
 
  
 0.957
caiD_2
Carnitinyl-CoA dehydratase.
 
 0.898
fadB_3
Fatty acid oxidation complex subunit alpha.
  
 0.897
etfB
Electron transfer flavoprotein subunit beta.
 
 
 0.861
etfA
Electron transfer flavoprotein subunit alpha.
 
 
 0.851
fadJ
Fatty acid oxidation complex subunit alpha.
  
 0.803
fadB_5
Fatty acid oxidation complex subunit alpha.
  
 0.803
fadK
Short-chain-fatty-acid--CoA ligase.
  
  
 0.779
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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