Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
gutB_1Sorbitol dehydrogenase. (362 aa)    
Predicted Functional Partners:
gutB_5
Sorbitol dehydrogenase.
  
  
 
0.928
AMY53810.1
D-arabitol-phosphate dehydrogenase.
  
  
 
0.926
gutB_6
Sorbitol dehydrogenase.
  
  
 
0.923
budC_1
Diacetyl reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 0.905
xecD
2-(R)-hydroxypropyl-CoM dehydrogenase.
  
 
 0.904
AMY52353.1
Hypothetical protein.
 
   
 0.814
AMY52354.1
Hypothetical protein.
  
    0.784
lsrD
Autoinducer 2 import system permease protein LsrD; Belongs to the binding-protein-dependent transport system permease family.
  
    0.734
rbsA_3
Ribose import ATP-binding protein RbsA.
  
    0.732
AMY52357.1
Hypothetical protein.
 
    0.530
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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