Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fadD3_23-[(3aS,4S,7aS)-7a-methyl-1, 5-dioxo-octahydro-1H-inden-4-yl]propanoyl:CoA ligase. (514 aa)    
Predicted Functional Partners:
mas
Mycocerosic acid synthase.
  
 0.898
ppsA
Phthiocerol synthesis polyketide synthase type I PpsA.
  
 0.836
yhfT_1
Putative acyl--CoA ligase YhfT.
  
     0.704
pspA_2
Phosphoserine phosphatase 1.
  
    0.661
AMY52364.1
Hypothetical protein; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.657
pspA_3
Phosphoserine phosphatase 1.
  
    0.652
AMY52365.1
Hypothetical protein.
 
  
 0.638
acdA_5
Acyl-CoA dehydrogenase.
 
  
 0.634
AMY51886.1
Putative ligase.
  
     0.632
AMY55231.1
Long-chain-fatty-acid--CoA ligase FadD15.
 
 
 0.592
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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