Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pspA_2Phosphoserine phosphatase 1. (199 aa)    
Predicted Functional Partners:
pspA_3
Phosphoserine phosphatase 1.
 
    
0.799
cmdD_2
Chondramide synthase cmdD.
 
   
 0.676
cmdD_1
Chondramide synthase cmdD.
 
   
 0.673
fadD3_2
3-[(3aS,4S,7aS)-7a-methyl-1, 5-dioxo-octahydro-1H-inden-4-yl]propanoyl:CoA ligase.
  
    0.661
AMY52365.1
Hypothetical protein.
 
     0.582
acdA_5
Acyl-CoA dehydrogenase.
 
 
   0.547
AMY52357.1
Hypothetical protein.
  
     0.526
AMY52364.1
Hypothetical protein; Belongs to the thiolase-like superfamily. Thiolase family.
 
    0.511
AMY52376.1
Hypothetical protein.
  
     0.504
pdhB
Pyruvate dehydrogenase E1 component subunit beta.
  
 
 0.469
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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