Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
cmdD_2Chondramide synthase cmdD. (581 aa)    
Predicted Functional Partners:
yfmJ_2
Putative NADP-dependent oxidoreductase YfmJ.
       0.781
AMY52360.1
Hypothetical protein.
 
     0.726
AMY52376.1
Hypothetical protein.
  
     0.725
AMY52382.1
Hypothetical protein.
  
     0.705
bdhA_1
D-beta-hydroxybutyrate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.688
pspA_2
Phosphoserine phosphatase 1.
 
   
 0.676
AMY54978.1
Hypothetical protein.
 
     0.653
AMY52357.1
Hypothetical protein.
  
     0.645
betI_2
HTH-type transcriptional regulator BetI.
  
     0.635
AMY52436.1
Hypothetical protein.
  
    0.624
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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