Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY52461.1Hypothetical protein. (334 aa)    
Predicted Functional Partners:
csxA
Exo-beta-D-glucosaminidase.
 
     0.971
AMY52453.1
Aminoacyl carrier protein.
 
     0.886
AMY52454.1
Cyclohex-1-ene-1-carbonyl-CoA dehydrogenase.
 
     0.885
AMY52455.1
Amino acid--[acyl-carrier-protein] ligase.
 
     0.885
AMY55011.1
Hypothetical protein.
  
     0.751
AMY52456.1
Hypothetical protein.
 
     0.743
AMY54682.1
Hypothetical protein.
  
     0.457
AMY52471.1
Hypothetical protein.
  
     0.426
ubiE_1
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE.
  
     0.408
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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