Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
bmrAMultidrug resistance ABC transporter ATP-binding/permease protein BmrA. (598 aa)    
Predicted Functional Partners:
rsbW_2
Serine-protein kinase RsbW.
  
    0.718
AMY53627.1
Putative ABC transporter ATP-binding protein.
   
   0.673
rsfB_3
Anti-sigma-F factor antagonist RsfB; Belongs to the anti-sigma-factor antagonist family.
       0.648
acuC
Acetoin utilization protein AcuC.
 
 0.611
ftsH_2
ATP-dependent zinc metalloprotease FtsH; Belongs to the AAA ATPase family.
 
 
 0.606
glnQ_3
Glutamine transport ATP-binding protein GlnQ.
 
     
0.595
ctpE
Putative cation-transporting ATPase E.
  
 
 0.535
drrA_5
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
  
 0.517
dnaK_1
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.501
ettA_2
Energy-dependent translational throttle protein EttA.
  
 0.496
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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