Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY52472.1Hypothetical protein. (68 aa)    
Predicted Functional Partners:
AMY52475.1
Hypothetical protein.
 
     0.695
AMY52473.1
Hypothetical protein.
 
     0.661
AMY52471.1
Hypothetical protein.
       0.631
AMY52962.1
Hypothetical protein.
 
     0.569
ephD_1
Putative oxidoreductase EphD; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.560
AMY52474.1
Baeyer-Villiger monooxygenase.
       0.497
lipF_2
Carboxylesterase LipF.
       0.497
AMY54107.1
Putative Rieske 2Fe-2S iron-sulfur protein.
  
     0.475
AMY51415.1
Hypothetical protein.
  
     0.438
AMY52769.1
Hypothetical protein.
  
     0.410
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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