Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY52479.1Putative HTH-type transcriptional regulator. (225 aa)    
Predicted Functional Partners:
ethA_1
FAD-containing monooxygenase EthA.
     
 0.776
aiiM
N-acyl homoserine lactonase.
       0.773
AMY52736.1
Hypothetical protein.
 
     0.576
mshD_7
Mycothiol acetyltransferase.
  
    0.571
lppW
Putative lipoprotein LppW.
  
     0.506
AMY54155.1
Hypothetical protein.
  
     0.480
AMY54137.1
Hypothetical protein.
  
     0.463
fabG_8
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
     0.460
AMY55116.1
Hypothetical protein.
  
     0.439
AMY52985.1
Hypothetical protein.
  
     0.437
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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