Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
adhT_1Alcohol dehydrogenase. (336 aa)    
Predicted Functional Partners:
adhC2
NADP-dependent alcohol dehydrogenase C 2.
  
  
0.923
thcA
EPTC-inducible aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.921
ald_1
3-succinoylsemialdehyde-pyridine dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.920
AMY52708.1
Putative aldehyde dehydrogenase.
  
 0.918
puo_2
Putrescine oxidase.
    
  0.901
alkB_1
Alkane 1-monooxygenase.
     
  0.900
alkB_2
Alkane 1-monooxygenase.
     
  0.900
alkB_3
Alkane 1-monooxygenase.
     
  0.900
AMY52501.1
Hypothetical protein.
       0.727
acsA_4
Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
 0.535
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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