Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mntH_1Divalent metal cation transporter MntH. (428 aa)    
Predicted Functional Partners:
kipA_1
KipI antagonist.
  
  
 0.834
dapA_1
4-hydroxy-tetrahydrodipicolinate synthase; Belongs to the DapA family.
 
     0.626
ctpE
Putative cation-transporting ATPase E.
   
 0.620
fruA
PTS system fructose-specific EIIABC component.
     
 0.591
yecD
Isochorismatase family protein YecD.
       0.565
kipI
Kinase A inhibitor.
 
  
 0.532
AMY52532.1
Hypothetical protein.
       0.508
AMY52533.1
Hypothetical protein.
       0.508
pxpA
Hypothetical protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
  
 0.495
czcD_1
Metal cation efflux system protein CzcD.
  
 
 0.479
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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