Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ddpC_1Putative D,D-dipeptide transport system permease protein DdpC. (312 aa)    
Predicted Functional Partners:
oppD_1
Oligopeptide transport ATP-binding protein OppD.
  
 0.993
oppF_1
Oligopeptide transport ATP-binding protein OppF.
 
 0.984
nikB_1
Nickel transport system permease protein NikB.
 
 0.980
oppD_2
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 0.943
ddpD
Putative D,D-dipeptide transport ATP-binding protein DdpD.
 
 0.943
dppA_1
Periplasmic dipeptide transport protein.
 
 
 0.939
gsiA_4
Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily.
 
 0.936
oppF_2
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
 0.927
AMY54667.1
Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.923
gsiA_1
Glutathione import ATP-binding protein GsiA; Belongs to the ABC transporter superfamily.
 
 0.921
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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