Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMY52555.1Hypothetical protein. (404 aa)    
Predicted Functional Partners:
fabG_6
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
 
     0.915
AMY52557.1
Hypothetical protein.
 
     0.906
pdxA2
4-hydroxythreonine-4-phosphate dehydrogenase 2; Belongs to the PdxA family.
 
     0.863
dppA_1
Periplasmic dipeptide transport protein.
 
     0.859
garL
5-keto-4-deoxy-D-glucarate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
     0.777
srlR_1
Glucitol operon repressor.
 
     0.653
oppF_1
Oligopeptide transport ATP-binding protein OppF.
       0.511
yhdN_1
General stress protein 69.
  
    0.487
oppD_1
Oligopeptide transport ATP-binding protein OppD.
       0.462
ddpC_1
Putative D,D-dipeptide transport system permease protein DdpC.
       0.442
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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