Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
srlR_1Glucitol operon repressor. (253 aa)    
Predicted Functional Partners:
fruA
PTS system fructose-specific EIIABC component.
 
  
 0.969
pfkB
ATP-dependent 6-phosphofructokinase isozyme 2; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.852
pdxA2
4-hydroxythreonine-4-phosphate dehydrogenase 2; Belongs to the PdxA family.
 
  
 0.848
AMY52557.1
Hypothetical protein.
 
  
 0.834
lacC
Tagatose-6-phosphate kinase.
 
  
 0.672
AMY52555.1
Hypothetical protein.
 
     0.653
AMY55792.1
Acetyltransferase Pat.
    
   0.629
dppA_1
Periplasmic dipeptide transport protein.
 
     0.607
glpD2_1
Glycerol-3-phosphate dehydrogenase 2; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
 
  
 0.562
fabG_6
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
     
 0.556
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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