Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
kmtR_1HTH-type transcriptional regulator KmtR. (118 aa)    
Predicted Functional Partners:
mdtG
Multidrug resistance protein MdtG.
 
     0.712
AMY52563.1
Putative HTH-type transcriptional regulator.
  
    0.606
AMY52774.1
Hypothetical protein; Transcriptional repressor SmtB homolog.
  
     0.491
pleD_2
Response regulator PleD.
     
 0.480
ctpJ
Putative cation-transporting P-type ATPase J.
 
  
 0.436
zur
Zinc uptake regulation protein; Belongs to the Fur family.
 
  
 0.420
AMY52832.1
Putative HTH-type transcriptional regulator.
  
     0.408
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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