Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AMY52563.1Putative HTH-type transcriptional regulator. (245 aa)    
Predicted Functional Partners:
kmtR_1
HTH-type transcriptional regulator KmtR.
  
    0.606
mdtG
Multidrug resistance protein MdtG.
       0.530
AMY52736.1
Hypothetical protein.
 
     0.508
AMY53465.1
Hypothetical protein.
  
     0.493
AMY52245.1
Hypothetical protein.
 
     0.476
acrC_1
Acryloyl-CoA reductase (NADH).
 
     0.412
pleD_2
Response regulator PleD.
     
 0.404
fabG_8
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
     0.402
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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