efe_1 protein (Rhodococcus fascians D188) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

efe_1

2-oxoglutarate-dependent ethylene/succinate-forming enzyme; Belongs to the iron/ascorbate-dependent oxidoreductase family. (354 aa)

Predicted Functional Partners:

tatA_1

0.659

tatC_1

0.613

tatB_1

0.613

AMY52570.1

0.528

Your Current Organism:

Rhodococcus fascians D188

NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AMY52570.1	efe_1	A3L23_01219	A3L23_01223	Hypothetical protein.	2-oxoglutarate-dependent ethylene/succinate-forming enzyme; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.528
AMY52570.1	tatA_1	A3L23_01219	A3L23_01220	Hypothetical protein.	Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.	0.705
AMY52570.1	tatB_1	A3L23_01219	A3L23_01222	Hypothetical protein.	Sec-independent protein translocase protein TatB.	0.746
AMY52570.1	tatC_1	A3L23_01219	A3L23_01221	Hypothetical protein.	Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.	0.665
efe_1	AMY52570.1	A3L23_01223	A3L23_01219	2-oxoglutarate-dependent ethylene/succinate-forming enzyme; Belongs to the iron/ascorbate-dependent oxidoreductase family.	Hypothetical protein.	0.528
efe_1	tatA_1	A3L23_01223	A3L23_01220	2-oxoglutarate-dependent ethylene/succinate-forming enzyme; Belongs to the iron/ascorbate-dependent oxidoreductase family.	Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.	0.659
efe_1	tatB_1	A3L23_01223	A3L23_01222	2-oxoglutarate-dependent ethylene/succinate-forming enzyme; Belongs to the iron/ascorbate-dependent oxidoreductase family.	Sec-independent protein translocase protein TatB.	0.613
efe_1	tatC_1	A3L23_01223	A3L23_01221	2-oxoglutarate-dependent ethylene/succinate-forming enzyme; Belongs to the iron/ascorbate-dependent oxidoreductase family.	Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.	0.613
tatA_1	AMY52570.1	A3L23_01220	A3L23_01219	Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.	Hypothetical protein.	0.705
tatA_1	efe_1	A3L23_01220	A3L23_01223	Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.	2-oxoglutarate-dependent ethylene/succinate-forming enzyme; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.659
tatA_1	tatB_1	A3L23_01220	A3L23_01222	Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.	Sec-independent protein translocase protein TatB.	0.883
tatA_1	tatC_1	A3L23_01220	A3L23_01221	Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.	Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.	0.982
tatB_1	AMY52570.1	A3L23_01222	A3L23_01219	Sec-independent protein translocase protein TatB.	Hypothetical protein.	0.746
tatB_1	efe_1	A3L23_01222	A3L23_01223	Sec-independent protein translocase protein TatB.	2-oxoglutarate-dependent ethylene/succinate-forming enzyme; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.613
tatB_1	tatA_1	A3L23_01222	A3L23_01220	Sec-independent protein translocase protein TatB.	Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.	0.883
tatB_1	tatC_1	A3L23_01222	A3L23_01221	Sec-independent protein translocase protein TatB.	Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.	0.980
tatC_1	AMY52570.1	A3L23_01221	A3L23_01219	Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.	Hypothetical protein.	0.665
tatC_1	efe_1	A3L23_01221	A3L23_01223	Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.	2-oxoglutarate-dependent ethylene/succinate-forming enzyme; Belongs to the iron/ascorbate-dependent oxidoreductase family.	0.613
tatC_1	tatA_1	A3L23_01221	A3L23_01220	Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.	Sec-independent protein translocase protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.	0.982
tatC_1	tatB_1	A3L23_01221	A3L23_01222	Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.	Sec-independent protein translocase protein TatB.	0.980

Server load: low (16%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About