Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY52577.1Hypothetical protein. (222 aa)    
Predicted Functional Partners:
AMY54394.1
Hypothetical protein.
 
   
 0.786
AMY53374.1
Hypothetical protein.
  
  
 0.770
AMY55628.1
Hypothetical protein.
  
     0.766
AMY54101.1
Hypothetical protein.
  
     0.761
AMY55741.1
Alpha-(1->3)-arabinofuranosyltransferase.
  
     0.761
AMY55277.1
Hypothetical protein.
 
   
 0.753
aftB
Terminal beta-(1->2)-arabinofuranosyltransferase.
  
     0.748
AMY53923.1
Hypothetical protein.
  
     0.742
lprB
Putative lipoprotein LprB.
  
     0.738
AMY54351.1
Hypothetical protein.
  
     0.728
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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