Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
tycC_3Tyrocidine synthase 3. (3286 aa)    
Predicted Functional Partners:
AMY52402.1
Hypothetical protein.
 
 
 0.999
mbtB
Phenyloxazoline synthase MbtB.
 
 
0.996
fabF_2
3-oxoacyl-[acyl-carrier-protein] synthase 2.
  
 0.995
ppsA
Phthiocerol synthesis polyketide synthase type I PpsA.
  
0.989
lgrD_3
Linear gramicidin synthase subunit D.
 
  
 0.989
dhbF_3
Dimodular nonribosomal peptide synthase.
 
  
0.981
tycC_1
Tyrocidine synthase 3.
 
  
0.979
lgrD_4
Linear gramicidin synthase subunit D.
 
  
0.979
dhbF_1
Dimodular nonribosomal peptide synthase.
 
  
0.978
phzD
Putative isochorismatase.
 
  
 0.975
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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