Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AMY52593.1Hypothetical protein. (364 aa)    
Predicted Functional Partners:
ywqD_2
Tyrosine-protein kinase YwqD.
 
  
 0.843
rfaG
Lipopolysaccharide core biosynthesis protein RfaG.
 
     0.814
wbbL_2
N-acetylglucosaminyl-diphospho-decaprenol L-rhamnosyltransferase.
 
  
 0.787
AMY52590.1
Hypothetical protein.
       0.773
AMY52592.1
Hypothetical protein.
       0.773
AMY52594.1
Hypothetical protein.
     
 0.702
elmMIII
8-demethyl-8-(2, 3-dimethoxy-alpha-L-rhamnosyl)-tetracenomycin-C 4'-O-methyltransferase.
 
  
 0.688
mshA_4
D-inositol 3-phosphate glycosyltransferase.
 
     0.630
treZ
Malto-oligosyltrehalose trehalohydrolase.
   
 0.626
glgB
1,4-alpha-glucan branching enzyme GlgB; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
   
 0.621
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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