Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY52594.1Hypothetical protein. (229 aa)    
Predicted Functional Partners:
ywqD_2
Tyrosine-protein kinase YwqD.
  
  
 0.784
rfaG
Lipopolysaccharide core biosynthesis protein RfaG.
     
 0.702
AMY52593.1
Hypothetical protein.
     
 0.702
AMY52590.1
Hypothetical protein.
       0.701
AMY52592.1
Hypothetical protein.
       0.701
elmMIII
8-demethyl-8-(2, 3-dimethoxy-alpha-L-rhamnosyl)-tetracenomycin-C 4'-O-methyltransferase.
     
 0.561
oatA_1
O-acetyltransferase OatA.
     
 0.481
AMY52019.1
Antitoxin.
  
 
 0.406
AMY52208.1
Hypothetical protein.
  
 
 0.406
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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