Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rspR_4HTH-type transcriptional repressor RspR. (206 aa)    
Predicted Functional Partners:
lutR_2
HTH-type transcriptional regulator LutR.
 
  
 0.775
lutR_4
HTH-type transcriptional regulator LutR.
 
  
 0.775
mce2R
HTH-type transcriptional regulator Mce2R.
  
     0.774
rspR_7
HTH-type transcriptional repressor RspR.
  
     0.773
lldR
Putative L-lactate dehydrogenase operon regulatory protein.
 
  
 0.765
lutR_5
HTH-type transcriptional regulator LutR.
 
  
 0.759
rspR_10
HTH-type transcriptional repressor RspR.
 
  
 0.749
lutR_3
HTH-type transcriptional regulator LutR.
 
  
 0.722
pdhR_1
Pyruvate dehydrogenase complex repressor.
 
  
 0.719
yngG
Hydroxymethylglutaryl-CoA lyase YngG; Belongs to the alpha-IPM synthase/homocitrate synthase family.
       0.692
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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