Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AMY52638.1Hypothetical protein. (379 aa)    
Predicted Functional Partners:
AMY53299.1
Putative inactive lipase.
 
     0.766
AMY54126.1
Putative inactive lipase.
 
     0.766
AMY52903.1
Putative inactive lipase.
 
     0.763
AMY54124.1
Putative inactive lipase.
 
     0.762
AMY52110.1
Putative inactive lipase.
 
     0.759
AMY53599.1
Putative inactive lipase.
 
     0.706
AMY53139.1
Putative inactive lipase.
  
     0.649
AMY52637.1
Hypothetical protein.
       0.581
AMY53024.1
Putative inactive lipase.
 
     0.576
AMY52636.1
Hypothetical protein.
       0.425
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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