Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
bedABenzene 1,2-dioxygenase system ferredoxin--NAD(+) reductase subunit. (380 aa)    
Predicted Functional Partners:
hcaC
3-phenylpropionate/cinnamic acid dioxygenase ferredoxin subunit.
 
 
 0.956
AMY52670.1
Cytochrome p450 CYP199A2.
 
  
 0.931
thcD_1
Rhodocoxin reductase.
 
  
 
0.928
thcD_2
Rhodocoxin reductase.
  
  
 
0.927
AMY52669.1
Ferredoxin.
     
 0.810
AMY52667.1
Hypothetical protein.
       0.781
AMY52666.1
Hypothetical protein.
       0.773
betI_3
HTH-type transcriptional regulator BetI.
       0.664
nirD
Nitrite reductase (NADH) small subunit.
 
  
 0.622
nasF
Uroporphyrinogen-III C-methyltransferase.
 
  
 0.611
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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