Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AMY52669.1Ferredoxin. (65 aa)    
Predicted Functional Partners:
AMY52670.1
Cytochrome p450 CYP199A2.
 
  
 0.884
AMY52666.1
Hypothetical protein.
 
     0.814
bedA
Benzene 1,2-dioxygenase system ferredoxin--NAD(+) reductase subunit.
     
 0.810
AMY52667.1
Hypothetical protein.
       0.781
betI_3
HTH-type transcriptional regulator BetI.
 
     0.703
AMY52671.1
Hypothetical protein.
 
     0.692
AMY54109.1
Putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
 0.569
AMY53510.1
Hypothetical protein.
 
   
 0.498
fprB_2
Putative ferredoxin/ferredoxin--NADP reductase.
 
   
 0.482
fprB_1
Putative ferredoxin/ferredoxin--NADP reductase.
 
   
 0.470
Your Current Organism:
Rhodococcus fascians D188
NCBI taxonomy Id: 1051973
Other names: R. fascians D188, Rhodococcus fascians str. D188, Rhodococcus fascians strain D188
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